Publications

Verónica Lloréns-Rico, Joshua A. Simcock, Geert R. B. Huys, Jeroen Raes (2022). Single-cell approaches in human microbiome research. Cell.

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Verónica Lloréns-Rico, Ann C. Gregory, Johan Van Weyenbergh, Sander Jansen, Tina Van Buyten, Junbin Qian, Marcos Braz, Soraya Maria Menezes, Pierre Van Mol, Lore Vanderbeke, Christophe Dooms, Jan Gunst, Greet Hermans, Philippe Meersseman, CONTAGIOUS collaborators, Els Wauters, Johan Neyts, Diether Lambrechts, Joost Wauters, Jeroen Raes (2021). Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host. Nature Communications.

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Verónica Lloréns-Rico, Sara Vieira-Silva, Pedro J. Gonçalves, Gwen Falony, Jeroen Raes (2021). Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases. Nature Communications.

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Soraya Maria Menezes, Marcos Braz, Verónica Lloréns-Rico, Joost Wauters, Johan Van Weyenbergh (2021). Endogenous IFNB expression predicts outcome in critical patients with COVID-19. The Lancet Microbe.

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Eva Yus, Verónica Lloréns-Rico, Sira Martínez, Carolina Gallo, Hinnerk Eilers, Cedric Bloetz, Joerg Stuelke, Maria Lluch-Senar, Luis Serrano (2019). Determination of the gene regulatory network of a genome-reduced bacterium highlights alternative regulation independent of transcription factors. Cell Systems.

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Verónica Lloréns-Rico, Jeroen Raes (2019). Tracking humans and microbes. Nature.

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Kevin D'hoe, Stefan Vet, Karoline Faust, Frédéric Moens, Gwen Falony, Didier Gonze, Verónica Lloréns-Rico, Lendert Gelens, Jan Danckaert, Luc De Vuyst, Jeroen Raes (2018). Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. eLife.

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Samuel Miravet-Verde, Verónica Lloréns-Rico, Luis Serrano (2017). Alternative transcriptional regulation in genome-reduced bacteria. Current Opinion in Microbiology.

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Ivan Junier, E Besray Unal, Eva Yus, Verónica Lloréns-Rico, Luis Serrano (2016). Insights into the mechanisms of basal coordination of transcription using a genome-reduced bacterium. Cell Systems.

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Verónica Lloréns-Rico, Jaime Cano, Tjerko Kamminga, Rosario Gil, Amparo Latorre, Wei-Hua Chen, Peer Bork, John I Glass, Luis Serrano, Maria Lluch-Senar (2016). Bacterial antisense RNAs are mainly the product of transcriptional noise. Science Advances.

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Christina Kiel, Hannah Benisty, Verónica Lloréns-Rico, Luis Serrano (2016). The yin–yang of kinase activation and unfolding explains the peculiarity of Val600 in the activation segment of BRAF. eLife.

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Maria Lluch-Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns-Rico, Sabine Pereyre, Cécile Bebear, Luis Serrano (2015). Comparative “-omics” in Mycoplasma pneumoniae clinical isolates reveals key virulence factors. PLOS ONE.

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Verónica Lloréns-Rico, Maria Lluch-Senar, Luis Serrano (2015). Distinguishing between productive and abortive promoters using a random forest classifier in Mycoplasma pneumoniae. Nucleic Acids Research.

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Maria Lluch‐Senar, Javier Delgado, Wei‐Hua Chen, Verónica Lloréns-Rico, Francis J O'Reilly, Judith AH Wodke, E Besray Unal, Eva Yus, Sira Martínez, Robert J Nichols, Tony Ferrar, Ana Vivancos, Arne Schmeisky, Jörg Stülke, Vera van Noort, Anne‐Claude Gavin, Peer Bork, Luis Serrano (2015). Defining a minimal cell: essentiality of small ORF s and nc RNA s in a genome‐reduced bacterium. Molecular Systems Biology.

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Verónica Lloréns-Rico, Luis Serrano, Maria Lluch-Senar (2014). Assessing the hodgepodge of non-mapped reads in bacterial transcriptomes: real or artifactual RNA chimeras?. BMC Genomics.

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Maria Lluch-Senar, Khai Luong, Verónica Lloréns-Rico, Javier Delgado, Gang Fang, Kristi Spittle, Tyson A Clark, Eric Schadt, Stephen W Turner, Jonas Korlach, Luis Serrano (2013). Comprehensive Methylome Characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at Single-Base Resolution. PLOS Genetics.

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