Bioinformatics

Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases
While metagenomic sequencing has become the tool of preference to study host-associated microbial communities, downstream analyses and …
Verónica Lloréns-Rico, Sara Vieira-Silva, Pedro J. Gonçalves, Gwen Falony, Jeroen Raes
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Distinguishing between productive and abortive promoters using a random forest classifier in Mycoplasma pneumoniae
Distinguishing between promoter-like sequences in bacteria that belong to true or abortive promoters, or to those that do not initiate …
Verónica Lloréns-Rico, Maria Lluch-Senar, Luis Serrano
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Assessing the hodgepodge of non-mapped reads in bacterial transcriptomes: real or artifactual RNA chimeras?
Background - RNA sequencing methods have already altered our view of the extent and complexity of bacterial and eukaryotic …
Verónica Lloréns-Rico, Luis Serrano, Maria Lluch-Senar
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